PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g018610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 475aa    MW: 52726.4 Da    PI: 8.9275
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g018610.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-057799123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Sopen08g018610.1 77 FVCEICNKGFQRDQNLQLHRRGH 99
                      89*******************88 PP

2zf-C2H212.60.00042153175123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k++  +s+ k H + +
  Sopen08g018610.1 153 WKCEKCSKRYAVQSDWKAHSKIC 175
                       58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.63E-67699No hitNo description
PfamPF121717.5E-57799IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497799IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-4141174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.63E-6148173No hitNo description
SMARTSM00355130153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MLGDDSMSNL TSASNEASIS STNNRIEIGS HVLYPQLQNI QTQPPPNKKK RNLPGNPDPE  60
AEVVALSPRS LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRSN KEVKKKVYVC  120
PEASCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKICGTREY  180
RCDCGTLFSR RDSFITHRAF CDALTEESSR TIIPPPNSST SHHLNLHTLQ NFQMKQEQQQ  240
QQQQSNDLSS QLFIQNPNSN SSNMFGALPP HMSATALLQK AAQIGVTSSS HTANNMSATT  300
FFSPTTSTAS GIAMSGSGSG AGGGDIASRQ YHPFENNNNN NNTNTDFVTG NTSFHDFGAS  360
VTPGFMEQVH DMQNMMATTA PSLPCTSFDD GFGRGAQLMR QGKENNEGLT RDFLGLRAFP  420
HHRDFLSTTT PPAALHYNMG SSSAAAAPAS FDQHQHHHHH HQNQNQNQNQ SPWQN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085741.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotQ8H1F51e-118IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLK4CL860.0K4CL86_SOLLC; Uncharacterized protein
STRINGSolyc08g063040.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-114indeterminate(ID)-domain 2